Even rarer! The 3-speed manual Trans Am's were rare when new, and those that survived into the 70's and 80's usually had a 4-speed transplant.
Things like the master cylinder, booster, exhaust, those items I consider wear-and-tear items. The important stuff is all there.
Interesting that someone (perhaps a dealer) would order a 1969 Trans Am without a console, without Rally II's, and with the base 3-speed, yet they ordered the tach and gauge package.